CRISPRDetect help (last help update 10/8/2016 by CMB)
CRISPR Detect is a tool to discover and explore the CRISPR non coding RNAs in sequence data. It is a bioinformatic tool to find CRISPR arrays.
Download the command line version:
CRISPRDetect Version 2.2: Download  
v2.2 10/8/2016 Minor fixes. Changed gff3 output to prevent warning messages on gff3 validation (e.g. Artemis). As spacer is not\ valid in the GO ontology used 'binding_site' instead as a label- the spacer is a nucleic acid binding site.
v2.1 1/6/2016 The final submission version of CRISPRDetect v2.1 is described and available here. All earlier released presubmision '1' or 2.0 versions were testing versions and may have minor bugs, please update to 2.1 or later.
CRISPRDetect is part of CRISPRSuite (more information)
For enquiries contact chris.brown@otago.ac.nz
 
 
   Input section:

1. Input sequence and parameters

2. Search putative CRISPRs using the following options

3. Filter out poor CRISPRs using one or more of the following parameters

4. Optional parameters [can be modified once the output is generated]



Output Section

Re-running selected modules and other usefule options

Predicted array:

REFERENCES :

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2.	Sorek, R., C.M. Lawrence and B. Wiedenheft, (2013) CRISPR-mediated adaptive immune systems in bacteria and archaea. Annu Rev Biochem, 82:237-66.
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